Sequence Analysis and Molecular Graphics

Instructional BioMod Courses

 

Syllabus for March 2005

 

Online registration is required via BioMod course page

 

All classes meet in Biology New Media Center (BNMC) Computer Lab,

Room 1240 Biotech Center

 

Classes start on TIME. Please be prompt!

 

BioMods do NOT receive UW credit. Classes are limited to 32 people per class.  Preference will be given to: 1- faculty, 2- staff, 3-graduate students.  UW undergraduates may enroll ONLY if there are available slots, and with the explicit permission of the course instructor (acpalmen@wisc.edu)

 

Date

Time

Mod

Title

March 08

Tuesday

5:00-7:00 PM

M02

Desktop 3D molecular graphics: RasMol, RasMol commands

March 08

Tuesday

7:30-9:30 PM

M03

Desktop molecular graphics: publication quality images, surfaces, automatic movies & animations, VMD software

March 09

Wednesday

5:00-7:00 PM

M04

Web-based database searching (BLAST, FASTA, ProSite)

March 09

Wednesday

7:30-9:30 PM

M05

Desktop alignment (ClustalX) & phylogenetic reconstruction (PAUP)

March 15

Tuesday

5:00-7:00 PM

M06

Sequences, genes & genome databases. software: Artemis. Databases: NCBI LocusLink & Ensembl

March 15

Tuesday

7:30-9:30 PM

M07

DNASTAR Lasergene: PrimerSelect, Seqman (Sequence Assembly)

March 16

Wednesday

5:00-7:00 PM

M08

Basic UNIX for GCG users, and Introduction to GCG (prerequisite for M09)

March 16

Wednesday

7:30-9:30 PM

M09

Pairwise & multiple sequence analysis (GCG)